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Publications by Patrik Lundström

Original articles in peer-reviewed journals

  1. J.M. Björnsson, E. Andersson, Patrik Lundström, N. Larsson, X. Xue, E. Repetowska, R.K. Humphries and S. Karlsson* (2001) Proliferation of primitive myeloid progenitors can be reversibly induced by HoxA10. Blood 98(12):3301-3308.
  2. J.M. Björnsson, N. Larsson, A.C.M. Brun, M. Magnusson, E. Andersson, Patrik Lundström, J. Larsson, E. Repetowska, M. Ehinger, R.K. Humphries and S. Karlsson* (2003) Reduced proliferative capacity of hematopoietic stem cells deficient in hoxb3 and hoxb4. Mol. Cell. Biol. 23(11):3872-3883.
  3. Patrik Lundström and M. Akke* (2005) Quantitative analysis of conformational exchange contributions to 1H-15N multiple-quantum relaxation using field-dependent measurements. Time-scale and structural characterization of exchange in a calmodulin C-terminal domain mutant. J. Am. Chem. Soc. 126(3):928-935.
  4. Patrik Lundström and M. Akke* (2005) Off-resonance rotating-frame amide proton spin relaxation experiments measuring microsecond chemical exchange in proteins. J. Biomol. NMR 32(2):163-173.
  5. Patrik Lundström and M. Akke* (2005) Microsecond protein dynamics measured by 13Ca rotating-frame spin relaxation. Chembiochem 6(9):1685-1692.
  6. Patrik Lundström, F.A.A. Mulder and M. Akke* (2005) Correlated dynamics of consecutive residues reveal transient and cooperative unfolding of secondary structure in proteins. Proc. Natl. Acad. Sci. U.S.A. 102(47):16984-16989.
  7. K. Teilum, U. Brath, Patrik Lundström, and M. Akke* (2006) Biosynthetic 13C labeling of aromatic side chains in proteins for NMR relaxation measurements. J. Am. Chem. Soc. 128(8):2506-2507.
  8. Patrik Lundström, P. Vallurupalli, T.L. Religa, F.W. Dahlquist and L.E. Kay* (2007) A single-quantum methyl 13C-relaxation dispersion experiment with improved sensitivity. J. Biomol. NMR 38(1):79-88.
  9. Patrik Lundström, K. Teilum, T. Carstensen, I. Bezsonova, S. Wiesner, D.F. Hansen, T.L. Religa, M. Akke and L.E. Kay*. Fractional 13C enrichment of isolated carbons using [1-13C]- or [2-13C]-glucose facilitates the accurate measurement of dynamics at backbone Ca and side-chain methyl positions in proteins. (2007) J. Biomol. NMR 38(3):199-212.
  10. D.M. Korzhnev, T.L. Religa, Patrik Lundström, A.R. Fersht and L.E. Kay* (2007) Characterization of a transient folding intermediate of an FF domain by 15N, 13Ca; and 13C-methyl relaxation dispersion and hydrogen exchange NMR spectroscopy. J. Mol. Biol. 372(2):497-512.
  11. D.F. Hansen, P. Vallurupalli, Patrik Lundström, P. Neudecker and L.E. Kay* (2008) Probing chemical shifts of invisible states of proteins with relaxation dispersion NMR spectroscopy: How well can we do? J. Am. Chem. Soc. 130(8):2667-2675.
  12. Patrik Lundström, D.F. Hansen and L.E. Kay* (2008) Measurement of carbonyl chemical shifts of excited protein states by relaxation dispersion NMR spectroscopy: Comparison between uniformly and selectively 13C labeled samples. J. Biomol. NMR 42(1):35-47.
  13. Patrik Lundström, D.F. Hansen, P. Vallurupalli and L.E. Kay* (2009) Accurate measurement of alpha proton chemical shifts of excited protein states by relaxation dispersion NMR spectroscopy. J. Am Chem. Soc. 131(5):1915-26.
  14. P. Vallurupalli, D.F. Hansen, Patrik Lundström and L.E. Kay* (2009) CPMG relaxation dispersion NMR experiments measuring glycine 1Ha and 13Ca chemical shifts in the ‘invisible’ excited states of proteins. J. Biomol. NMR 45(1-2):45-55.
  15. Patrik Lundström, H. Lin and L.E. Kay* (2009) Measuring 13Cb chemical shifts of excited states in proteins by relaxation dispersion NMR spectroscopy. J. Biomol NMR 44(3):139-155.
  16. R. Auer , P. Neudecker, D.R. Muhandiram, Patrik Lundström, D.F. Hansen, R. Konrat and L.E. Kay* (2009) Measuring the signs of 1Ha chemical shift differences between ground and excited protein states by off-resonance spin-lock R1rho NMR Spectroscopy. J. Am. Chem. Soc. 131(31):10832-10833.
  17. H. Ghasriani, T. Ducat, C.T. Hart, F. Hafizi, N. Chang, A. Al-Baldawi, S.H. Ayed, Patrik Lundström, J.R. Dillon and N.K. Goto* (2010) Appropriation of the MinD protein-interaction motif by the dimeric interface of the bacterial cell division regulator MinE. Proc. Natl. Acad. Sci. USA 107(43):18416-18421.
  18. C.N. Chi, A. Bach, K. Strømggard, Patrik Lundström*, N. Ferguson* and P. Jemth*. Biophysical characterization of the complex between human papillomavirus E6 and SAP97. (2011) J. Biol. Chem. 286:3597-3606.
  19. S. R. Haq, C. N. Chi, A. Bach, J. Dogan, Å. Engström, G. Hultqvist, A. Karlsson, Patrik Lundström, L. C. Montemiglio, K. Strømgaard, S. Gianni and P. Jemth* (2012) Side chain interactions form late and cooperatively in the binding reaction between disordered peptide and PDZ domain. J. Am. Chem. Soc. 134(1):599-605
  20. A.L. Hansen, Patrik Lundström, A. Velyvis and L.E. Kay* (2012) Quantifying millisecond exchange dynamics in proteins by CPMG relaxation dispersion NMR using side-chain 1H probes. J. Am. Chem. Soc. 134(6):3178-3189
  21. A. Bach, B.H*. Clausen, M. Møller, B. Vestergaard, C.N. Chi, A. Round, P.L. Sørensen, K.B., Nissen, J.S. Kastrup, M. Gajhede, P. Jemth, A.S. Kristensen, Patrik Lundström, K.L. Lambertsen and K. Strømgaard* (2012) High-affinity dimeric inhibitor of PSD-95 protects against ischemic brain damage. Proc. Natl. Acad. Sci. U.S.A 109(9):3317-3322.
  22. P. Neudecker, P. Robustelli, A. Cavalli, P. Walsh, Patrik Lundström, A. Zarrine-Afsar, Simon Sharpe, M. Vendruscolo, L.E. Kay* (2012) Structure of an Intermediate State in Protein Folding and Aggregation. Science 336(6079):362-366.
  23. C. Andresen, S. Helander, A. Lemak, C. Fares, V. Csizmok, J. Carlsson, L.Z. Penn, J.D. Forman-Kay, C.H. Ar­rowsmith, Patrik Lundström and M. Sunnerhagen* (2012) Transient structure in the dynamically disordered c-Myc transactivation domain participates in a multivalent complex with the transcriptional regulator Bin1. Nucl. Acids Res. 40(13):6353-6366.
  24. C.N. Chi, S.R. Haq, S. Rinaldo, J. Dogan, F. Cutruzzolà, Å. Engström, S. Gianni, Patrik Lundström*, and P. Jemth* (2012) Interactions outside the boundaries of the canonical PDZ binding groove influence the ligand binding. Biochemistry 51(44):8971-8979.
  25. A. Ahlner,  M. Carlsson, B.-H. Jonsson and Patrik Lundström* (2013) PINT – a software for integration of peak volumes and extraction of relaxation rates. J. Biomol NMR doi:10.1007/s10858-013-9737-7.
  26. M. Anandapadamanaban, C. Andresen, S. Helander, Y. Ohyama, M.I. Siponen, Patrik Lundström, T. Kokubo, M. Ikura, M. Moche, and M. Sunnerhagen (2013) High-resolution structure of yTBP with yTAF1 reveals anchor sites for transcriptional regulation. Nat. Struct. Mol. Biol. (in press)
  27. U. Weininger, A.T. Blissing, J. Hennig, A. Ahlner, Z. Liu, H.J. Vogel, M. Akke* and Patrik Lundström* (2013) Protein conformational exchange measured by 1H R1rho relaxation dispersion of methyl groups. (submitted)

 

Review articles and book chapters

  1. P. Neudecker, Patrik Lundström and L.E. Kay* (2009) Relaxation dispersion NMR spectroscopy as a tool for detailed studies of protein folding. Biophys. J. 96(6):2045-2054.
  2. Patrik Lundström, P. Vallurupalli, D.F. Hansen and L.E. Kay* (2009) Isotope labeling methods for studies of excited protein states by relaxation dispersion NMR spectroscopy. Nat. Protoc. 4(11):1641-1648.
  3. M. Akke* and Patrik Lundström (2012). Conformational dynamics by relaxation dispersion. In Encyclopedia of Biophysics, pp 1967-1979. (ed. J.P. Loria)
  4. Patrik Lundström* (2012) The nuclear Overhauser effect. In Encyclopedia of Biophysics, pp 1753-1759. (ed. M. Ikura)
  5. Patrik Lundström*, A. Ahlner and A.T. Blissing (2012) Isotope labeling methods for relaxation measurements. In Isotope Labeling Methods for Biomolecular NMR Spectroscopy. (ed. H.S. Atreya)
  6. Patrik Lundström*, A. Ahlner and A.T. Blissing (2012) Isotope labeling methods for large systems. In Isotope Labeling Methods for Biomolecular NMR Spectroscopy. (ed. H.S. Atreya)


 

 


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Last updated: Tue May 14 07:31:06 CEST 2013